Source: r-bioc-purecn
Standards-Version: 4.7.4
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders:
 Andreas Tille <tille@debian.org>,
Section: gnu-r
Testsuite: autopkgtest-pkg-r
Build-Depends:
 debhelper-compat (= 14),
 dh-r,
 r-base-dev,
 r-bioc-dnacopy,
 r-bioc-variantannotation,
 r-bioc-genomicranges,
 r-bioc-iranges,
 r-cran-rcolorbrewer,
 r-bioc-s4vectors,
 r-cran-data.table,
 r-bioc-summarizedexperiment,
 r-bioc-seqinfo,
 r-bioc-genomeinfodb,
 r-bioc-genomicfeatures,
 r-bioc-rsamtools,
 r-bioc-biobase,
 r-bioc-biostrings,
 r-bioc-biocgenerics,
 r-bioc-rtracklayer,
 r-cran-ggplot2,
 r-cran-gridextra,
 r-cran-futile.logger,
 r-cran-vgam,
 r-cran-mclust,
 r-bioc-rhdf5,
 r-cran-matrix,
 r-pkg-team-core-architecture,
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-purecn
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-purecn.git
Homepage: https://bioconductor.org/packages/PureCN/

Package: r-bioc-purecn
Architecture: all
Depends:
 ${R:Depends},
 ${misc:Depends},
 r-pkg-team-core-architecture,
Recommends:
 ${R:Recommends},
Suggests:
 ${R:Suggests},
Description: Copy number calling and SNV classification using targeted short read sequencing
 This package estimates tumor purity, copy number, and loss of heterozygosity
 (LOH), and classifies single nucleotide variants (SNVs) by somatic status
 and clonality. PureCN is designed for targeted short read sequencing data,
 integrates well with standard somatic variant detection and copy number
 pipelines, and has support for tumor samples without matching normal samples.
