Estimation of Jacquard's Genetic Identity Coefficients

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Documentation for package ‘Jacquard’ version 1.0.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

BoxplotDelta	Boxplots of Jacquard Coefficients
BoxplotTheta	Boxplots of Relateness parameters
CalculateMom	Calculate Moment Estimators for Relatedness Parameters
CalculateTheta	Calculate Relatedness Paramenters from Jacquard Coefficients tA Capitalized Title (ideally limited to 65 characters)
DeltaPair	Extract estimates of Jacquard coefficients for a given pair
DeltaSimulatedPedigree	Estimates of Jacquard Coefficients for Simulated SNP data according to a Pedigree
GTC	Joint Genotype Counts according to a Pedigree
Jacquard.cls	Estimation of Jacquard coefficients by Constrained Least Squares
JointGenotypeCounts	Calculate joint pairwise Genotype Counts
mafvector	Calculate the Minor Allele Frequency (MAF) for a matrix with (0,1,2) genotype data
MakeM	Create matrix of conditional joint genotype probabilities
PairwiseList	Create a Pairwise List of Jacquard Coefficients
SimulatedPedigree	Simulated SNP data according to a Pedigree